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Volume 78, Issue 12, Pages e1-e6 (December 2009)


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Combining hidden Markov models and latent semantic analysis for topic segmentation and labeling: Method and clinical application

Filip GinteraCorresponding Author Informationemail address, Hanna Suominenabemail address, Sampo Pyysalob, Tapio Salakoskiabemail address

Received 31 October 2008; received in revised form 17 December 2008; accepted 5 February 2009. published online 27 March 2009.

Abstract 

Motivation

Topic segmentation and labeling systems enable fine-grained information search. However, previously proposed methods require annotated data to adapt to different information needs and have limited applicability to texts with short segment length.

Methods

We introduce an unsupervised method based on a combination of hidden Markov models and latent semantic analysis which allows the topics of interest to be defined freely, without the need for data annotation, and can identify short segments.

Results

The method is evaluated on intensive care nursing narratives and motivated by information needs in this domain. The method is shown to considerably outperform a keyword-based heuristic baseline and to achieve a level of performance comparable to that of a related supervised method trained on 3600 manually annotated words.

a Department of Information Technology, University of Turku, Joukahaisenkatu 3-5, 20520 Turku, Finland1

b Turku Centre for Computer Science (TUCS), Joukahaisenkatu 3-5, 20520 Turku, Finland

Corresponding Author InformationCorresponding author. Tel.: +358 50 4138305.

PII: S1386-5056(09)00017-3

doi:10.1016/j.ijmedinf.2009.02.003


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